Marc Choisy

UMR Univ. Montpellier, CNRS 5290, IRD 224
Building 2G, Apartment 103
Van Phuc Diplomatic Compound
298 Kim Mã Street
Ba Đình District, Hanoi, Vietnam

Tel: +84 16 38 99 78 96

>> Home
>> Publications
>> Vitae
>> Links

Marc Choisy

PubMed PubMed PubMed ORCID ORCID

Research articles

  1. DELABOUGLISE A., CHOISY M., PHAN D.T., ANTOINE-MOUSSIAUX N., PEYRE M., VU D.T., PFEIFFER D.U. & FOURNIÉ G. (2017) Seasonality of demand for livestock products driving infectious diseases dynamics: the case of avian influenza in Vietnam Scientific Reports 7: 5905. [PDF]

  2. CHOISY M., KEOMALAPHET S., XAYDALASOUK K., QUET F., LATTHAPHASAVANG V. & BUISSON Y. (2017) Prevalence of hepatitis B virus (HBV) infection among pregnant women attending antenatal clinics in Vientiane, Laos, 2008-2014 Hepatitis Research and Treatment 2017: 1284273. [PDF]

  3. BOITHIAS L., CHOISY M., SOULIYASENG N., JOURDREN M., QUET F., BUISSON Y., THAMMAHACKSA C., SILVERA N., SENGTAHEUANGHOUNG O., PIERRET A., ROCHELLE-NEWALL E., BECERRA S. & RIBOLZI 0. (2016) Hydrological regime and water shortage as drivers of the seasonal incidence of diarrheal diseases in a tropical montane environment PLoS Negl Trop Dis 10(12): e0005195. [PDF]

  4. NGUYỄN T.V.A., BAÑULS A.-L., TRAN T.H.T., PHAM K.L.T., NGUYỄN T.S., NGUYỄN H.V., NGUYỄN N.L.T., NGUYỄN N.L.T., DANG D.A., MARKS G.B. & CHOISY M. (2016) Mycobacterium tuberculosis lineages and anti-tuberculosis drug resistance in reference hospitals across Vietnam BMC Microbiology 16: 167. [PDF]

  5. MAI D.T., PEACOCK T.P., BICH V.T.N., FABRIZIO T., DANG N.H., THO N.D., DIEP N.T., MINH N., HOA L.N.M., TRANG H.T.T., CHOISY M., INUI K., NEWMAN S., TRUNG N.V., van DOORN F.R., TO T.L., IQBAL M. & BRYANT J.E. (2016) Prevalence and diversity of H9N2 avian influenza in chickens of Northern Vietnam, 2014 Infect. Genet. Evol. 44: 530-540. [PDF]

  6. CHAZEL M., MARCHANDIN H., KECK N., TERRU D., CARRIÈRE C., PONSADA M., JACOMO V., PANTEIX G., BOUZINBI N., BAÑULS A.-L., CHOISY M., AUBREY A. & GODREUIL S. (2016) Evaluation of the SLOMYCO Sensititre® Panel for testing the antimicrobial susceptibility of Mycobacterium marinum isolates Ann. Clin. Microbiol. Antimicrob. 15: 30. [PDF]

  7. PEYRE M., CHOISY M., SOBHY H., KILANY W.H., GÉLY M., TRIPODI A., DAUPHIN G., SAAD M., ROGER F., LUBROTH J. & JOBRE Y. (2016) Added value of avian influenza (H5) day old chick vaccination for disease control in Egypt Avian Diseases 60(1 Suppl): 245-252. [PDF]

  8. ALTHAUS C.L., CHOISY M., ALIZON S. & the CSF group (2015) How sex acts scale with the number of sex partners: evidence from Chlamydia trachomatis data and implications for control PeerJ Preprints. [PDF]

  9. van PANHUIS W.G., CHOISY M., XIONG X., CHOK N.S., AKARASEWI P., IAMSIRITHAWORN S., LAM S.K., CHONG C.K., LAM F.C., PHOMMASAK B., VONGPHRACHANH P., BOUAPHANH K., REKOL H., HIEN N.T., DUONG T.N., THAI P.Q., CHUANG J.-H., LIU Y.-L., NG L.C., SHI Y., TAYAG E.A., ROQUE V.G., SUY L.L.L., JARMAN R.G., GIBBONS R.V., VELASCO J.M.S., YOON I.-K., BURKE D.S. & CUMMINGS D.A.T. (2015) Region-wide synchrony and traveling waves of dengue across eight countries in Southeast Asia Proc. Natl. Acad. Sci. USA 112(42): 13069-13074. [PDF]

  10. TRANG N.V., CHOISY M., NAKAGOMI T., CHINH N.T.M., DOAN Y.H., YAMASHIRO T., BRYANT J.E., NAKAGOMI O. & ANH D.D. (2015) Determination of cut-off cycle threshold values in routine RT-PCR assays to assist differential diagnosis of norovirus in children hospitalized for acute gastroenteritis Epidemiology & Infection 143(15): 3292-3299. [PDF] [R code]

  11. LE VIET T., CHOISY M., BRYANT J.E., VU T.D., PHAM Q.T., LE Q.M., HORBY P., NGUYEN T.H. & WERTHEIM H.F.L. (2015) A Dengue outbreak on a floating village at Cat Ba island in Vietnam BMC Public Health 15: 940. [PDF]

  12. THAI P.Q., CHOISY M., DUONG T.N., THIEM V.D., YEN N.T., HIEN N.T., WEISS D.J., BONI M.F. & HORBY P. (2015) Seasonality of absolute humidity explains seasonality of influenza-like illness in Vietnam Epidemics 13: 65-73. [PDF]

  13. HOA L.N.M., BRYANT J.E., CHOISY M., NGUYET L.A., BAO N.T., TRANG N.H., CHUC N.T.K., TOAN T.K., SAITO T., TAKEMAE N., HORBY P.W., WERTHEIM H.F.L. & FOX A. (2015) Population susceptibility to a variant swine-origin influenza virus A/H3N2 in Vietnam, 2011-2012 Epidemiology & Infection 143(14): 2959-2964. [PDF]

  14. ÐỖ T.T.T., MARTENS P., LƯU N.H., WRIGHT P. & CHOISY M. (2014) Climatic-driven seasonality of emerging dengue fever in Hanoi, Vietnam BMC Public Health 14: 1078. [PDF]

  15. CHOISY M. & DE ROODE J.C. (2014) The ecology and evolution of animal medication: genetically fixed response versus phenotypic plasticity. The American Naturalist 184 (Suppl. 1): S31-46. [PDF] [Movie]

  16. ROCHE B., BROUTIN H., CHOISY M., GODREUIL S., CONSTANTIN DE MAGNY G., CHEVALEYRE Y., ZUCKER J.-D., BREBAN R., CAZELLES B. & SIMARD F. (2014) The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries? BMC Public Health 14: 753-761. [PDF]

  17. GASCUEL F., CHOISY M., DUPLANTIER J.-M., DÉBARRE F. & BROUAT C. (2013) Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus. PLoS Comput Biol 9 (5): e1003039. [PDF]

  18. BERNGRUBER W.T., FROISSART R., CHOISY M. & GANDON S. (2013) Evolution of virulence in emerging epidemics. PLoS Pathog 9 (3): e1003209. [PDF]

  19. VALE P.F., CHOISY M. & LITTLE T.J. (2013) Host nutrition alters the variance in parasite transmission potential. Biology Letters 9 (2): 20121145. [PDF]. Seen in The Times, The Herald, and on CBS.

  20. KOUOKAM E., ZUCKER J.-D., FONDJO F. & CHOISY M. (2013) Disease control in an age-structured population. ISRN Epidemiology 2013: 703230. [PDF]

  21. VALE P.F., CHOISY M., FROISSART R., SANJUÁN R. & GANDON S. (2012) The distribution of mutational fitness effects of phage ΦX174 on different hosts. Evolution 66 (11): 3495-3507. [PDF] [SOM] Faculty of 1000 Biology

  22. NGUYỄN T.V.A., CHOISY M., NGUYỄN D.H., TRẤN T.H.T., PHẠM K.L.T., ĐINH P.T.T., PHILIPPE J., NGUYỄN T.S., HỒ M.L., TRẦN S.V., BAÑULS A.-L. & ĐĂNG D.A. (2012) High prevalence of Beijing and EAI4-VNM genotypes among M. tuberculosis isolates in northern Vietnam: sampling effect, rural and urban disparities. PLoS ONE 7 (9): e45553. [PDF]

  23. CHOISY M. & ROHANI P. (2012) Changing spatial epidemiology of pertussis in continental USA. Proc. R. Soc. B 279 (1747): 4574-4581. [PDF] [SEM] [Movies]

  24. BROUTIN V., BAÑULS A.-L., AUBRY A., KECK N., CHOISY M., BERNADET J.-F., MICHEL C., RAYMOND J.-C., LIBERT C., BARNAUD A., STRAGIER P., PORTAELS F., TERRU D., BELON C., DEREURE O., GUTIERREZ C., BOSCHIROLI M.-L., VAN DE PERRE P., CAMBAU E. & GODREUIL S. (2012) Genetic diversity and population structure of Mycobacterium marinum: New insights into host and environmental specificities. Journal of Clinical Microbiology 50 (11): 3627-3634. [PDF]

  25. GIMONNEAU G., POMBI M., CHOISY M., MORAND S., DABIRE R. & SIMARD F. (2012) Larval habitat segregation between the molecular forms of the mosquito Anopheles gambiae in a rice field area of Burkina Faso, West Africa. Medical and Veterinary Entomology 26 (1): 9-17. [PDF]

  26. FAYE B., BAÑULS A.-L., BUCHETON B., DIONE M.M., BASSANGANAM O., HIDE M., DEREURE J., CHOISY M., NDIAYE J.L., KONATÉ O., CLAIRE M., SENGHOR M.W., FAYE M.N., SY I., NIANG A.A., MOLEZ J.-F., VICTOIR K., MARTY P., DELAUNAY P., KNECHT R., MELLUL S., DIEDHIOU S. & GAYE O. (2010) Canine visceral leishmaniasis caused by Leishmania infantum in Senegal: risk of emergence in humans? Microbes and Infection 12 (14-15): 1219-1225. [PDF]

  27. CHOISY M. & DE ROODE J.C. (2010) Mixed infections and the evolution of virulence: effects of resource competition, parasite plasticity and impaired host immunity. The American Naturalist 175 (5): E105-E118. [PDF] Faculty of 1000 Biology

  28. GODREUIL S., RENAUD, F., CHOISY M., DEPINA J., GARNOTEL E., MORILLON M., VAN DE PERRE P. & BAÑULS A.L. (2010) Highly structured genetic diversity of Mycobacterium tuberculosis population in Djibouti. Clinical Microbiology and Infection 16: 1023-1026. [PDF]

  29. PRUGNOLLE F., CHOISY M. & DE MEEÛS T. (2008) Clonality v0.4: a randomization-based program to test for heterozygosity-genet size relationships in clonal organisms. Molecular Ecology Resources 8 (5): 954-956. [PDF]

  30. NETTLE D., GRACE J.B., CHOISY M., CORNELL H.V., GUÉGAN J.-F. & HOCHBERG M.E. (2007) Cultural diversity, economic development and societal instability. PLoS ONE 2 (9): e929. [PDF]

  31. CHOISY M., GUÉGAN J.-F. & ROHANI P. (2006) Dynamics of infectious diseases and pulse vaccination: teasing apart the embedded resonances effects. Physica D 223 (1): 26-35. [PDF]

  32. CHOISY M. & ROHANI P. (2006) Harvesting can increase severity of wildlife disease epidemics. Proc. R. Soc. B 273 (1597): 2025-2034. [PDF] [comment from The New Scientist] Faculty of 1000 Biology

  33. CHOISY M., HIDE M., BAÑULS A.-L. & GUÉGAN J.-F. (2004) Rocking the curve. Trends in Microbiology 12 (12): 534-536. [PDF]

  34. PRUGNOLLE F., CHOISY M., THÉRON A., DURAND P. & DE MEEÛS T. (2004) Sex-specific correlation between heterozygosity and clone size in the trematode Schistosoma mansoni. Molecular Ecology 13 : 2859-2864. [PDF]

  35. FARGETTE D., PINEL A., ABUBAKAR Z., TRAORÉ O., BRUGIDOU C., FATOGOMA S., HÉBRARD H., CHOISY M., YACOUBA S., FAUQUET C. & KONATÉ G. (2004) Inferring the evolutionary history of Rice Yellow Mottle Virus from genomic, phylogenetic, and phylogeographic studies. Journal of Virology 78(7): 3252-3261. [PDF]

  36. CHOISY M., FRANCK P. & CORNUET J.M. (2004) Estimating admixture proportions with microsatellites: comparison of methods based on simulated data. Molecular Ecology 13 : 955-968. [PDF] [Color Figures]

  37. CHOISY M., WOELK C.H., GUÉGAN J.-F. & ROBERTSON D.L. (2004) Comparative study of adaptive molecular evolution in different HIV clades. Journal of Virology 78 (4): 1962-1970.[PDF] [Supplementary Materials] [Corrected Fig. 2]

  38. CHOISY M., BROWN S.P., LAFFERTY K.D. & THOMAS F. (2003) Evolution of trophic transmission in parasites: Why add intermediate hosts? The American Naturalist 162 (2): 172-181.[PDF]

Book chapters

  1. CHOISY M. (2016) The control of infectious diseases in a regional context. In Shared Challenges for Development within ASEAN -- Applied and Analytical Methods. (LAGRÉE S. ed), Knowledge Publishing House. Pp. 105-121. [PDF]

  2. CHOISY M., SITBOULANG P., VONGPANHYA M., SAIYAVONG C., KHAMPHAPHONGPHANH B., PHOMMASACK B., QUET F., BUISSON Y., ZUCKER J.D. & VAN PANHUIS W.G. (2015) Rescuing public health data. In Socio-Ecological Dimensions of Infectious Diseases in Southeast Asia. (MORAND S., DUJARDIN J.P., LEFAIT-ROBIN R. & APIWATHNASORN C. eds), Springer, Singapore. Pp. 171-190. [PDF]

  3. CHOISY M. (2015) Origine et évolution du VIH. In Santé, Médecine et Sciences de l'Évolution : les Maladies Infectieuses. (VITTECOQ M., PRUGNOLLE F., ROCHE B., RENAUD F. & THOMAS F. eds), De Boeck Solal, Bruxelles, Belgique. Pp. 35-46. [PDF]

  4. CHOISY M. (2010) Modélisation mathématique en épidémiologie. In Écologie de la santé et conservation. (GAUTHIER-CLERC M. & THOMAS F. eds), De Boeck Université, Bruxelles, Belgique. Pp. 159-182. [PDF]

  5. CHOISY M. & CAZELLES B. (2008) Conséquences des dynamiques épidémiques en santé publique : Rôle des modèles mathématiques. In Introduction à l'Épidémiologie Intégrative des maladies infectieuses et parasitaires. (GUÉGAN J.F. & CHOISY M. eds), De Boeck Université, Bruxelles, Belgique. Pp. 3-40. [PDF]

  6. CHOISY M., GUÉGAN J.-F. & ROHANI P. (2007) Mathematical modeling of infectious disease dynamics. In Encyclopedia of Infectious Diseases - Modern Methods (TIBAYRENC M. ed), John Wiley and Sons, Chichester, USA. Pp. 379-404. [PDF]

  7. DE MEEÛS T., THÉRON A., PRUGNOLLE F., DURAND P., CAILLAUD D., CHOISY M., ROZE D., JARNE P., JABBOUR-ZAHAD R., ALONSO S., POINTIER J.P. & BOISSIER J. (2006) Les co-structures génétiques d'un parasite (Schistosoma mansoni) et de ses hôtes (mammifères et mollusques) dans la mangrove dulçaquicole de Guadeloupe : échelles spatiale, fonctionnelle et coévolutive. In Ecosystèmes tropicaux : actes du 2ème colloque de restitution du programme de recherche (BONHÊME I., APPORA V., ATRAMENTOWICZ M. & GILLON Y. eds), ECOFOR, Paris, France. Pp. 61-68. [PDF]

  8. CONSTANTIN DE MAGNY G. & CHOISY M. (2004) Mathematical and technological tools: when cholera meets the satellite. In Biodiversity and Global Change. Social Issues and Scientific Challenges (BARBAULT R. & CHEVASSUS-AU-LOUIS B. eds), ADPF, Paris, France. Pp. 123-125. [PDF]

Edited book

  1. GUÉGAN J.-F. & CHOISY M. (eds.) (2008) Introduction à l'Épidémiologie Intégrative des maladies infectieuses et parasitaires. De Boeck Université, 552 Pp.

© 2006-2017 Marc Choisy
Last modified: July 19 2017